PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G031000.1.p
Common NameGLYMA_20G031000, LOC100793940
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 335aa    MW: 37578.7 Da    PI: 4.6294
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G031000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.9e-184796255
                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y GVr+++ +grWv+eI+d      ++ r +lg+++tae+Aa+a+++a++ l+g
  Glyma.20G031000.1.p 47 RYIGVRQRP-SGRWVSEIKDtI----QNIRLWLGTYDTAEDAARAYDEAARLLRG 96
                         799******.7*********33....35***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.36E-2946103No hitNo description
SMARTSM003802.2E-3147110IPR001471AP2/ERF domain
PfamPF008474.8E-124796IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-2747104IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1947104IPR016177DNA-binding domain
PROSITE profilePS5103219.4447104IPR001471AP2/ERF domain
PRINTSPR003679.7E-84859IPR001471AP2/ERF domain
PRINTSPR003679.7E-87086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MANKRKRWEG QGDQGNSEEG NIELEQLREE AASMAADILV ARRAKKRYIG VRQRPSGRWV  60
SEIKDTIQNI RLWLGTYDTA EDAARAYDEA ARLLRGANTR TNFFSSQSSP NSVPALPLKI  120
AKLLLLRLKA RNMASSCVVT PFPSNHYEPE PESHFYHQIE ESYYGNSLDM VGNGIVEQNY  180
YCASYSSSAI ITTCDFSCGT NEENSNLEGS SREDSRLGYH CDDNVYDQNN QIVSGKEFED  240
CDAGIRDLQF LDTAGSLSCF FSPFEIAEEM VGSIEEEEKY RVDDSPLGRE SFRMKYERKF  300
SACLYTLIGV SECLSLQVGP GNGKELEKKI EDGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1446103159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556719.10.0PREDICTED: uncharacterized protein LOC100793940
TrEMBLK7N1420.0K7N142_SOYBN; Uncharacterized protein
STRINGGLYMA20G03890.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.18e-14related to AP2 11